Having multiple 'parents', how to do it right?

[Kenneth Fribert]

We have a few places where there are redundant paths.
One example is our VMWare farm, that comprises of several servers, running a lot of virtual servers, which can move dynamically between servers.
So we've created the vmware servers, and under them are the virtual servers, each virtual server thus have three 'parents'.
 
This works well, only problem is that the map display gets completely f..... up, and displays the branches that are redundant as empty boxes.
How do we do this better?
 
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